PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G1016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22807.2 Da PI: 10.6869 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.6 | 1.6e-18 | 17 | 62 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k ienk r vtfskRr gi KK +ELS+LC++e + i+fs+tgk Gh_A04G1016 17 KMIENKEDRLVTFSKRRLGIYKKISELSILCGTENLFIVFSPTGKP 62 68******************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-23 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.511 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-22 | 10 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-21 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MASTGKKTRG RKKTQMKMIE NKEDRLVTFS KRRLGIYKKI SELSILCGTE NLFIVFSPTG 60 KPFSFGCQSI ESVSNRFLSR NRPINDNTNI LIEAYRMLRT NKLVQHYNEI HSQMDGIKRK 120 KKVLVSAQQT SETNNTNHWW KTPIHQCNPR ELDELYSRFS ELAHMFHIAW CKKIANTSSM 180 STSTYFGNGH HRREF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hbx_A | 7e-14 | 2 | 73 | 3 | 74 | SERUM RESPONSE FACTOR |
1hbx_B | 7e-14 | 2 | 73 | 3 | 74 | SERUM RESPONSE FACTOR |
1hbx_D | 7e-14 | 2 | 73 | 3 | 74 | SERUM RESPONSE FACTOR |
1hbx_E | 7e-14 | 2 | 73 | 3 | 74 | SERUM RESPONSE FACTOR |
1k6o_B | 8e-14 | 2 | 73 | 2 | 73 | Serum response factor |
1k6o_C | 8e-14 | 2 | 73 | 2 | 73 | Serum response factor |
1srs_A | 7e-14 | 2 | 73 | 3 | 74 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
1srs_B | 7e-14 | 2 | 73 | 3 | 74 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673103.1 | 2e-69 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P5X859 | 1e-142 | A0A2P5X859_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G148000.1 | 1e-120 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-26 | AGAMOUS-like 57 |