PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0887
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 235aa    MW: 27305.3 Da    PI: 7.1957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0887genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-102875554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                  +++E++RR+++++ ++ L +llP++   +sk  ls  +   +Av+YI sL
  Gh_A04G0887 28 RKIIEKNRRNHMKNLYASLNSLLPHR---NSKElLSLPDQIDEAVNYITSL 75
                 589**********************9...88888**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-102394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1282375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-92795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-62875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MELQMEYLAV DKQIEKKRAR CSSAKIERKI IEKNRRNHMK NLYASLNSLL PHRNSKELLS  60
LPDQIDEAVN YITSLKTRMN ESREKKESLM RRKRSYTCAD TITSETTARS KSPEIKMNEN  120
GSAMEVVLTT GKDSQFMFYE MIYILHQHGA QVLNASFSIL GNTVFHIVHA EIGAFVGAQI  180
IKDKLNKLVK GSSCEEELQQ ELWDYQIHPE TWDLNYEIYP ETWDFPIMLG STYMP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.36630.0boll| ovule| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738602890.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614638.11e-177PREDICTED: transcription factor bHLH118-like
TrEMBLA0A2P5X6C71e-168A0A2P5X6C7_GOSBA; Uncharacterized protein
STRINGGorai.012G127900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-31bHLH family protein