PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G0594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27205.2 Da PI: 5.3683 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.6e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ vk+lG+ +W+ +a+t g++R++k+c++rw +yl Gh_A04G0594 17 KGPWHEEEDERLISFVKLLGSQRWDYVAQTSGLKRSGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 72 | 115 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + ++eE+ +++++++++G++ W+ Iar+++ gRt++++k++w+++l Gh_A04G0594 72 SISAEEEMIILKLHQKWGNK-WSMIARMLP-GRTDNEIKNYWRTHL 115 5699****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.768 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.26E-28 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-8 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.936 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.25E-12 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MANETTTAAM QGENLRKGPW HEEEDERLIS FVKLLGSQRW DYVAQTSGLK RSGKSCRLRW 60 VNYLRPNLKH GSISAEEEMI ILKLHQKWGN KWSMIARMLP GRTDNEIKNY WRTHLRKKAV 120 IQDQAWLSTG NFLFIQEDDN SPNSKTYNGE SYNPFVDISD TQNSCYAAAP VSDFGTSPYE 180 TRLSDWIPEF QSDQSEIKSQ LDSTTTTTHS CNFYPALFYE ENDVWGYSGS LWNMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-28 | 15 | 119 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-27 | 14 | 119 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-27 | 14 | 119 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-27 | 15 | 119 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 15 | 119 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616010 | 1e-160 | JX616010.1 Gossypium hirsutum clone NBRI_GE60350 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016739524.1 | 1e-172 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9SCP1 | 3e-62 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A1U8NNK9 | 1e-171 | A0A1U8NNK9_GOSHI; transcription factor MYB48-like | ||||
STRING | Gorai.009G413600.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11397 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-64 | myb domain protein 27 |
Publications ? help Back to Top | |||
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