PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0478

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 653aa MW: 70989.1 Da PI: 6.8674

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0478	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	369	406	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Gh_A04G0478 369 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 406 554459******************************88 PP
2	BELL	121.1	4.7e-39	230	301	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe+q+kkakL+++l+eV++rY+qy++q+q+v ssFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi Gh_A04G0478 230 EKQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVTSSFEQAAGIGSAKTYTALALKTISKQFRCLKDAISDQI 301 689********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.6E-63	148	299	IPR006563	POX domain
Pfam	PF07526	2.6E-49	155	298	IPR006563	POX domain
PROSITE profile	PS50071	12.195	347	410	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	350	414	IPR001356	Homeobox domain
CDD	cd00086	5.16E-12	350	411	No hit	No description
SuperFamily	SSF46689	8.13E-17	351	416	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-29	353	416	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	367	406	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MSTYFHGNPE IQASTDGLQT LVLMNPAYVQ YSDTPPPPPA NNLLFFNPNS LSPPQTQQLV 60 GIPLPATSAA NQGPTSHDIS PLHGLVQRVH YNLYNPIDPS GSARETPRSQ QGLSLTLSSL 120 QQPGYGSQAQ AVSDGSASSG SGVHNRVSGV QSVFLSSKYL KAAQELLDEV VNVNTTGITK 180 SELLAKKGGG GNNHSNSSSK AVGESSVVAG DGSGGGEAGE KHAAELTTAE KQEIQMKKAK 240 LINMLDEVEQ RYRQYHHQMQ IVTSSFEQAA GIGSAKTYTA LALKTISKQF RCLKDAISDQ 300 IRAANKSLGE EEDGVGGAAK IEGSRLKFVD HHLRQQRALQ QLGMIQHNAW RPQRGLPERS 360 VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEI 420 KEQEQNGTSD DKTSKTENHE DSASKSTAPS CQNPGENQKV SLMSISTAST SPLAGNAHQQ 480 SRFSLIGSSE LEGITQGSPK KPRSNELLQS PTSVPSMNMD MNQSEASNDV SMKFSKDGYS 540 FMGTNTDFMG GLGQYPIGEI GRFDAEQFAP RFPGNGVSLT LGLPHCENLS LSGTHQNFLP 600 NQTMQMGRRL DIDEPNEFGA INPPTPHSSA AYESINLQNR KRFVAQLLPD FVA

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MSTYFHGNPE IQASTDGLQT LVLMNPAYVQ YSDTPPPPPA NNLLFFNPNS LSPPQTQQLV  60
GIPLPATSAA NQGPTSHDIS PLHGLVQRVH YNLYNPIDPS GSARETPRSQ QGLSLTLSSL  120
QQPGYGSQAQ AVSDGSASSG SGVHNRVSGV QSVFLSSKYL KAAQELLDEV VNVNTTGITK  180
SELLAKKGGG GNNHSNSSSK AVGESSVVAG DGSGGGEAGE KHAAELTTAE KQEIQMKKAK  240
LINMLDEVEQ RYRQYHHQMQ IVTSSFEQAA GIGSAKTYTA LALKTISKQF RCLKDAISDQ  300
IRAANKSLGE EEDGVGGAAK IEGSRLKFVD HHLRQQRALQ QLGMIQHNAW RPQRGLPERS  360
VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEI  420
KEQEQNGTSD DKTSKTENHE DSASKSTAPS CQNPGENQKV SLMSISTAST SPLAGNAHQQ  480
SRFSLIGSSE LEGITQGSPK KPRSNELLQS PTSVPSMNMD MNQSEASNDV SMKFSKDGYS  540
FMGTNTDFMG GLGQYPIGEI GRFDAEQFAP RFPGNGVSLT LGLPHCENLS LSGTHQNFLP  600
NQTMQMGRRL DIDEPNEFGA INPPTPHSSA AYESINLQNR KRFVAQLLPD FVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	356	414	5	63	Homeobox protein Meis2
3k2a_B	4e-16	356	414	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6344	0.0	boll\| ovule\| stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577046	1e-81	JX577046.1 Gossypium hirsutum clone NBRI_GE8797 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016680139.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016680148.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_016680157.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1U8IPT9	0.0	A0A1U8IPT9_GOSHI; BEL1-like homeodomain protein 1
STRING	Gorai.009G396900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-162	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]