PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G0351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20752.7 Da PI: 8.7595 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 183.7 | 9.9e-57 | 7 | 160 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 s++eq+Cy+ Cn Cn ilav+vP ++lf++vtvrCG Ct+l s+n+a + q +a ++ ++ + e + ++l s +k +++ ++++ ++ Gh_A04G0351 7 SAPEQLCYIPCNLCNIILAVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRAGKEI---QVPDYTSSEYR---MELGSSSSKGKNKLPKRPTI-MN 97 789******************************************9999998888774...33333333333...34444444555555555553.34 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++e v v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl Gh_A04G0351 98 TTTQERV-----VNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 160 4444333.....69****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-63 | 8 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.64E-7 | 98 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSFNNSAPE QLCYIPCNLC NIILAVNVPC SCLFETVTVR CGQCTNLCSI NMAASFQSRA 60 GKEIQVPDYT SSEYRMELGS SSSKGKNKLP KRPTIMNTTT QERVVNRPPD KRHRAPSLYN 120 QFIKEEIQRI KLNNPDISHR EAFSTAAKNW ARFPHIHFGL MLETGTQPKL NDDSTEHFQQ 180 LLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21659 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526781 | 3e-63 | HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016738941.1 | 1e-136 | PREDICTED: axial regulator YABBY 5-like isoform X2 | ||||
Refseq | XP_016738942.1 | 1e-137 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Refseq | XP_016738943.1 | 1e-137 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Refseq | XP_016738944.1 | 1e-137 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Refseq | XP_016738945.1 | 1e-137 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Swissprot | Q8GW46 | 8e-75 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U8NIS0 | 1e-135 | A0A1U8NIS0_GOSHI; axial regulator YABBY 5-like isoform X2 | ||||
TrEMBL | A0A1U8NM12 | 1e-135 | A0A1U8NM12_GOSHI; axial regulator YABBY 5-like isoform X3 | ||||
STRING | Gorai.009G367100.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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