PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G1555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 38611.1 Da PI: 5.4998 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.3 | 2.9e-15 | 184 | 220 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+ Gh_A03G1555 184 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 220 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.5E-6 | 50 | 85 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.258 | 50 | 85 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.5E-9 | 54 | 84 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.9E-15 | 118 | 160 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.818 | 118 | 160 | IPR010402 | CCT domain |
SMART | SM00401 | 4.1E-9 | 178 | 231 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.66E-11 | 182 | 232 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-14 | 182 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.02E-14 | 183 | 230 | No hit | No description |
Pfam | PF00320 | 6.4E-13 | 184 | 220 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 184 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA 60 FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA 120 SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV 180 LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKGT LRDLRKGGRS THFDSKELET 240 PTDIKPSTLE PENSFANNDE QGSPQEKKPV PMDSENHLIT SNEQEFARNS HPFLIRVENS 300 SVNLDNEDIQ ETLEELADAS GSDFEIPSHF DEQVDIDDTN IVTAWPGT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.4860 | 0.0 | embryo| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016666615.1 | 0.0 | PREDICTED: GATA transcription factor 19-like | ||||
TrEMBL | A0A1U8HKN1 | 0.0 | A0A1U8HKN1_GOSHI; GATA transcription factor 19-like | ||||
STRING | Gorai.005G226000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12294 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 8e-49 | ZIM-like 1 |