PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1436
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 319aa    MW: 36055.4 Da    PI: 7.2359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1436genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.9e-08168213555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+e  r+RR++  ++   L++l+P++     kK++ a++L++A +YI+ Lq
  Gh_A03G1436 168 HSELARKRRQKRSDKTRCLQKLMPWD-----KKMDVATMLQEAYKYIRFLQ 213
                  89999********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.786163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-7167217No hitNo description
PfamPF000102.4E-5168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-10168220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-6169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKMEEYDFCS TLHPLHSYAP SPFTSSVHNT EFNNMMINSH EPKLFNDPNL RSLLPLPYEP  60
DGPCFFFTPD PDPDPIFPSL PLPDLDFSLF SSDIPDPASH PLLNLPSPPL FLSDLRPLHR  120
LPPLSASSTP KSKRTRLDLV LSHSDNNPQT LDSIVKSSNA PPPPIIPHSE LARKRRQKRS  180
DKTRCLQKLM PWDKKMDVAT MLQEAYKYIR FLQAQVSILQ SMPITSSFVS TTQHLNNASF  240
EVGFAGLGRL NRQQLLQVLI NSPVAQTMLC SQGLCVFATE QLVSLNKAKE RKTMLQQFLF  300
GRESDRLSEI AFVCACDEY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666414.10.0PREDICTED: transcription factor bHLH117-like
TrEMBLA0A1U8HSU50.0A0A1U8HSU5_GOSHI; transcription factor bHLH117-like
STRINGGorai.005G208700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.13e-22bHLH family protein