PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1284
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30522.8 Da    PI: 4.5089
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1284genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-184497457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +++++++q+e Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa+ k+
  Gh_A03G1284 44 KRRLSTTQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKN 97
                 55799**********************************************995 PP
2HD-ZIP_I/II119.61.6e-3843132291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrls+ qv++LE+sFe e+kLe++rK +la+eLglqprqva+WFqnrRAR k+kqlEk+y++L++++d+lk++ ++L ke+++L++++
  Gh_A03G1284  43 KKRRLSTTQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKNKQLEKEYDSLRATFDKLKADFDNLLKEKDDLKNQV 132
                  9**************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1835100IPR009057Homeodomain-like
PROSITE profilePS5007116.8273898IPR001356Homeobox domain
SMARTSM003897.9E-1741102IPR001356Homeobox domain
CDDcd000863.28E-174399No hitNo description
PfamPF000464.7E-154496IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-1845105IPR009057Homeodomain-like
PRINTSPR000311.3E-56978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000311.3E-57894IPR000047Helix-turn-helix motif
PfamPF021835.9E-1598139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEPLWTPSSS SSALQGEKPV MEYEYVNGGD DDLDGSCQPA GVKKRRLSTT QVEFLERSFE  60
VENKLESDRK LRLAKELGLQ PRQVAIWFQN RRARSKNKQL EKEYDSLRAT FDKLKADFDN  120
LLKEKDDLKN QVLTLKEKLL IKETGMENLG SVEAIHSSND EPQKPNPDAS HVPLLACKQE  180
EACSAKSDVF DSDSPHYPDG HGYHSSFIEP ADSSNVFEPD QSDEEDDLSK SLLHPPLFFP  240
KFDCYYDAPA TSCNFSLPVE DQSFWSSLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARSKNKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.152960.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666165.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A1U8HJD50.0A0A1U8HJD5_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGGorai.005G189800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-36homeobox 1