PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 256aa MW: 28438.5 Da PI: 8.1765 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.3 | 3.6e-33 | 3 | 57 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 + YkeClkNhAaslGgha+DGCgEfmp+++++ +++a++kCaACgCHRnFHRr++ Gh_A03G0876 3 LSYKECLKNHAASLGGHALDGCGEFMPTPSATpTDPASFKCAACGCHRNFHRRDP 57 68*****************************99********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.3E-28 | 4 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.997 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-30 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-17 | 5 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.34E-18 | 131 | 202 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 132 | 203 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.0E-27 | 141 | 198 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVLSYKECLK NHAASLGGHA LDGCGEFMPT PSATPTDPAS FKCAACGCHR NFHRRDPYDG 60 PAFIHRLPPP PNRSSSPSPT HSPGPSRTPP SPVPFSYYSS APHMLLALST AYSGPMDEYH 120 YHLSNSNPSV SRINNNNPSG RKRSRTKFTK EQKEKMHAFA ERLGWRMPEG EEKLIQEFCY 180 EVGVNRGVLK VWMHNNKNTF SKKELLSVGN LNLHDSHDNN NNIEDNGNAL DSNSHMHNNE 240 DSIQLHISTN NGSSTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-22 | 142 | 199 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11797 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016667152.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
Swissprot | Q9SEZ1 | 4e-74 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A1U8HM80 | 0.0 | A0A1U8HM80_GOSHI; zinc-finger homeodomain protein 11-like | ||||
STRING | Gorai.005G141400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-54 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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