PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0837
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 184aa    MW: 20729 Da    PI: 10.1694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0837genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-121667555
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                  +++E++RR+++++  ++L +l+P+ ++k++++  s  + L +A  YIk+L+
  Gh_A03G0837 16 RKAIEKKRRNDMKNLCFKLASLIPHhNFKPSKEIASQQDQLDLAAAYIKHLR 67
                 579**********************999999999****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3981166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-101271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-51671No hitNo description
SuperFamilySSF474596.41E-111684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-91766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-51772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKKNSCGGQS NSKPDRKAIE KKRRNDMKNL CFKLASLIPH HNFKPSKEIA SQQDQLDLAA  60
AYIKHLRERI EKLKRLKEEA MRSTEASSSM MERTASVGLT SPVLELRDFG SSIELVLITG  120
LNKNFMLYEV ISIFEQEGAE VVSASFSTVG GKIFHTLHAQ AKLSRVGVET TRVCQRLQEL  180
IKSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.91800.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738599770.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4600320.0KF460032.1 Gossypium hirsutum cultivar Sumian No.22 bHLH transcription factor (bHLH130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636810.11e-134PREDICTED: uncharacterized protein LOC108478864
TrEMBLA0A1U8HS991e-132A0A1U8HS99_GOSHI; uncharacterized protein LOC107887184
STRINGGorai.005G136000.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-17bHLH family protein