PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G0571

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 33714.4 Da PI: 4.5315

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G0571	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.7e-20	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Gh_A03G0571 89 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 142 56689************************************************9 PP
2	HD-ZIP_I/II	125.9	1.8e-40	88	179	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L ++y++lk++ + L ke+++L+ee+ Gh_A03G0571 88 EKKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAKYNSLKADYDDLLKEKDKLKEEVL 179 69**************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-20	74	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	84	144	IPR001356	Homeobox domain
SMART	SM00389	2.0E-20	87	148	IPR001356	Homeobox domain
CDD	cd00086	8.03E-18	89	145	No hit	No description
Pfam	PF00046	2.2E-17	89	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-20	91	151	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	115	124	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	124	140	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.9E-13	144	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAGGRVYPSN NDSTDGFPNN LSVLLQNQRL HPLFIPESSP SPFLGTRSIV SFEDSLKTSR 60 PKRSIFNMFD EQENGYDEYL DECFHQPEKK RRLTVDQIQF LEKSFEVDNK LEPERKIQLA 120 KDLGLQPRQV AIWFQNRRAR WKTKQLEKDY DTLLAKYNSL KADYDDLLKE KDKLKEEVLQ 180 LTDKLQTKEN EQRNSEFSDV KPLLLQEPSQ KPIVVSMAAC KQEDIDSDNI PQYYSDEFHS 240 SLLEAADSSY PFEPDQSDLS QDEEDSLHPP ASSSNFGFPV EGHPFWSWTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016665450.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A1U8HHB6	0.0	A0A1U8HHB6_GOSHI; homeobox-leucine zipper protein HAT5-like
STRING	Gorai.003G094500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28371	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-45	homeobox 1