 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A03G0521 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 223aa MW: 24957.1 Da PI: 4.6408 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 6 | 45 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
++++eE+ +++ +++G++ W++Iar+++ gRt++++k++w
Gh_A03G0521 6 KFSAEEERVVIELQAEFGNK-WAKIARHLP-GRTDNDVKNFW 45
79******************.*********.*********** PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 21.738 | 1 | 53 | IPR017930 | Myb domain |
| SMART | SM00717 | 1.2E-12 | 3 | 51 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 8.5E-13 | 6 | 45 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.19E-12 | 6 | 45 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 6 | 46 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 7.8E-12 | 6 | 56 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 223 aa Download sequence Send to blast |
MPSGCKFSAE EERVVIELQA EFGNKWAKIA RHLPGRTDND VKNFWSARRK RLERISHTPK 60 SKGKDHDVLH EMPMVEVVPS NGVPLEQGSS SHQHPFFPGN TEEFKMVPLP DLIKPDFLNM 120 ETGLSALDIE PIRMIPQLQL DLPILPDSFD FNFAAMFNNQ EASESESKPI SLTKIPSAGT 180 KGSDAELGKK ENIGNSATPD SFVDEFPTDM FDCLEQLVSS SEW |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016737751.1 | 1e-164 | PREDICTED: transcription repressor MYB4-like | ||||
| TrEMBL | A0A1U8NFD6 | 1e-163 | A0A1U8NFD6_GOSHI; transcription repressor MYB4-like | ||||
| STRING | Gorai.003G112700.1 | 1e-153 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM22291 | 4 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G60460.1 | 8e-27 | MYB family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|