PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 705aa MW: 78413.5 Da PI: 9.5262 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 597 | 646 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Gh_A03G0363 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.92E-6 | 400 | 490 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.733 | 592 | 651 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 596 | 649 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 597 | 647 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.48E-17 | 598 | 648 | No hit | No description |
SuperFamily | SSF46689 | 1.35E-15 | 598 | 679 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MELQKRLDYG FNGYQVPATP RATRSARKRV SFKKRVEDNR ISAFDLLATV AGKLLLDKES 60 TPVFSNTSSA EDPSKVEKNT VKEERWDGSQ SSKLETCDQY SNDREFIVSQ LVSQTNDLRS 120 CSFRESPSLK NDTHFGLTSV VTTSDCSERS GVLKLMNGKI KNETGCLPCK VETGPFLCGA 180 SGGRIKLEFE NKGPIHEELD RTDKLSIREV ADTCPLEDPV VVDGKPPLLV SSDSSGKTHS 240 YGFNNYLSSF PGKRDDLKVV SRDDDEKSSR CTYLGPIKKP FRPTPLIGDR RIRKTMTSKY 300 LKVAPRLNDV TLSNSDENLK SAYCDSSAYK RIRSERNYPF KKRKFLHYSS VSNSDGGISS 360 EGISDSPEQS INGNASGVYP KMRGVTGESP SLADQRKSFH SRDSHVKFRI KSFRVPELFI 420 EIPESATIGS LKRTVMEAVT AILGGGLRIG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG 480 FSLEPNPSQT FPSHCPGGSP LTFPCDTPLP LARYPATPGL VARVTHDPSH EPHMPNLGHF 540 VESDHDSAPS PTDMSLDKST TDSKALVAVP AISVEALDVV PAHRKSKQSE VVQRRIRRPF 600 SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE 660 PVPQELLDRV LTAHAYWSQQ QAKQQLKQQQ QPESCLLLYN SNSKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-56 | 581 | 687 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.14822 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016665257.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_016665258.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_016665259.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Swissprot | Q6R0E3 | 1e-143 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | A0A1U8HMP4 | 0.0 | A0A1U8HMP4_GOSHI; telomere repeat-binding protein 5-like | ||||
STRING | Gorai.003G130700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3240 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-115 | TRF-like 2 |