PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 593aa MW: 66456 Da PI: 6.9062 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.5e-09 | 374 | 411 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Gh_A03G0158 374 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 411 554459******************************88 PP | |||||||
2 | BELL | 112 | 3.4e-36 | 236 | 306 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++elqk+k+kLls+lee+d+rYk+y++q+++ + sFeavag+g+a +Y +lA+ka+SrhFrcL+d i++qi Gh_A03G0158 236 FMELQKRKTKLLSMLEELDRRYKHYCDQMKAAVLSFEAVAGIGAASVYSALASKAMSRHFRCLRDGIVGQI 306 689******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-62 | 171 | 304 | IPR006563 | POX domain |
Pfam | PF07526 | 2.3E-46 | 177 | 302 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 352 | 415 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.77E-11 | 355 | 416 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 355 | 419 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-17 | 356 | 421 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 358 | 421 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.8E-18 | 372 | 411 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MDDKSTGFCY STMQTHLVNQ IQSFESNPEM FNLTTGMEMI GFFNKNGSNT TTTTTTTGTP 60 SCSKAVNEST TEFYQHAEFI TGLEVGTESS GPWQDDSSLR CVFPCEGNER PSQGLSLSLS 120 SSNPTTIGVQ SFELKQVGHG YDNQHDDMRF IGSSSSSREA FFAKPANLHH HQGEFQLRNS 180 KYLGPTQELL NEFCSLGMKQ MDASKQKQSI HKGNKQWDDE NGGSSSMKQP LHSLDFMELQ 240 KRKTKLLSML EELDRRYKHY CDQMKAAVLS FEAVAGIGAA SVYSALASKA MSRHFRCLRD 300 GIVGQIQTTR KAMGEKNPVA PGTTKGETPR LRILDQALRQ QRAYQQMNMM ESHPWRPQRG 360 LPERSVSVLR AWLFEHFLHP YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM 420 YLEETKEHEN NNMASPNGAT NTNQNDQKPT PDQLVRVDSE CLSSIVTNLD KNDPKSAKTI 480 ETHQSLHHHH HHHQQQSFAT YGAMELDFSS YNHHQAAASN GGGVSLTLGL QQHGGNNGVS 540 LAFSPTSQSS LFYPRSDQIE DCQPVQYSLL DGEGQHLPYR NLMGAQLLHD LAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 361 | 419 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 361 | 419 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527213 | 1e-173 | HQ527213.1 Gossypium herbaceum clone NBRI_C_3534 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016755765.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-156 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1U8PX87 | 0.0 | A0A1U8PX87_GOSHI; homeobox protein BEL1 homolog | ||||
STRING | Gorai.003G156000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-157 | TALE family protein |
Publications ? help Back to Top | |||
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