PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G0029

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 569aa MW: 63903.5 Da PI: 6.3597

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G0029	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.6	2.5e-27	335	386	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++ WtpeLH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQkYR+ Gh_A03G0029 335 KVYWTPELHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRM 386 789**************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	2.4E-13	47	188	No hit	No description
SuperFamily	SSF52172	1.35E-12	47	167	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	17.75	50	164	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.1E-5	51	159	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS51294	14.162	330	389	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-26	331	389	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-18	332	389	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	333	387	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	336	385	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MKWGFSMILI FLNVICSTCW WLLKKGCHKP AMVCTANDLS TWKDFPKGLK ILLLDGDTNS 60 ANELKSKLEA MDYIAVYAFH DENEAILAVS SRPESFHVAI VEVSTDNNNG SFKFLETAKD 120 LPTIMTSNIH CISTMMKCIA LGAVEFLKKP LSEDKLRNIW QHVVHKAFNT GGNDLTESLK 180 PVKESVVSML QQQPENLKPK NEDSEKTEDA SMIHENDSEP PAGNDKYPAP STPQLEQGGR 240 LLDDRDCQDH THCSIEKESG EQDGETESVE TTSGNTTATG GQPQGPSETN VKEEDDSVDG 300 TMGESPQNRV DSKGSDVVAE KPSSCPDKAN RKKLKVYWTP ELHKKFVQAV DQLGIDQAIP 360 SRILELMKVE GLTRHNVASH LQKYRMQRRH MLPKEDDRRW LQRPQMQRIC NYPHKPIMAF 420 PPYHHVPVGP VYPMWGAPSH PPTIQMWGTQ GYPPWQPTES WHWKPYPGVH ADAWGCPVML 480 PPQGYFSTFP QNASGFQPCN VDKRNGMPQT LVEHHLEEEV IDKMVKEAIN KPWLPLPLGL 540 KPPSTDSVLA ELYRQGISTV PPHINASGR

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MKWGFSMILI FLNVICSTCW WLLKKGCHKP AMVCTANDLS TWKDFPKGLK ILLLDGDTNS  60
ANELKSKLEA MDYIAVYAFH DENEAILAVS SRPESFHVAI VEVSTDNNNG SFKFLETAKD  120
LPTIMTSNIH CISTMMKCIA LGAVEFLKKP LSEDKLRNIW QHVVHKAFNT GGNDLTESLK  180
PVKESVVSML QQQPENLKPK NEDSEKTEDA SMIHENDSEP PAGNDKYPAP STPQLEQGGR  240
LLDDRDCQDH THCSIEKESG EQDGETESVE TTSGNTTATG GQPQGPSETN VKEEDDSVDG  300
TMGESPQNRV DSKGSDVVAE KPSSCPDKAN RKKLKVYWTP ELHKKFVQAV DQLGIDQAIP  360
SRILELMKVE GLTRHNVASH LQKYRMQRRH MLPKEDDRRW LQRPQMQRIC NYPHKPIMAF  420
PPYHHVPVGP VYPMWGAPSH PPTIQMWGTQ GYPPWQPTES WHWKPYPGVH ADAWGCPVML  480
PPQGYFSTFP QNASGFQPCN VDKRNGMPQT LVEHHLEEEV IDKMVKEAIN KPWLPLPLGL  540
KPPSTDSVLA ELYRQGISTV PPHINASGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-16	331	386	3	58	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25088	0.0	ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109887999	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX581658	1e-103	JX581658.1 Gossypium hirsutum clone NBRI_GE14330 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638692.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Refseq	XP_017638693.1	0.0	PREDICTED: two-component response regulator-like APRR2 isoform X1
Swissprot	Q6LA43	1e-137	APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBL	A0A2P5WPH1	0.0	A0A2P5WPH1_GOSBA; Uncharacterized protein
STRING	Gorai.003G180100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5746	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.6	1e-137	ARR-B family protein

Publications ? help Back to Top
Gong L, et al. Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions. PLoS ONE, 2015. 10(5): p. e0128041 [PMID:26010543]