PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1817
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 437aa    MW: 49501.2 Da    PI: 10.7788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1817genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-181196192
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                 ffkvl+   v+k   l +p  f+ ++  +g  + +k+ +l++ sg+sW+v++  + ++g+y++ +GW++Fvk +gL+ gDf+vF l+++s+f  
  Gh_A02G1817 11 FFKVLVGDFVTK---LKIPPAFV-KYvlKG--KVPKKFSLYSDSGNSWRVRV--EVQQGSYFFNSGWSKFVKYHGLEIGDFLVFFLVDSSTFDV 96
                 556664433433...67******.774633..35678***************..*******************************998788744 PP
2B343.55.6e-141792571698
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + +p+ fa+e g+ ke s+t++ + ++g  W ++   + +++++ l++GW++F ++n++ +gD+++F+++ + +   +v++++
  Gh_A02G1817 179 VFIPRYFAKETGLGKE-SITII-KGPRGGMWPMNT--TESGRQVRLGGGWSQFLHENDIVVGDTLLFQHIPNAGNLVHVQILN 257
                  68*********98874.55555.99**********..*******************************998766657777765 PP
3B349.38.9e-163474261699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + +p + a+e+g+ ke s   +++d++gr+W++++    + +++ l++GW++F ++n+L++gD+++F+++ +++   +++++rk
  Gh_A02G1817 347 IPVPTSVAKEMGLTKEPS--TVIKDSKGRKWRLNI--LVYARSVHLGAGWSKFMEENKLEVGDTLLFQHIPNTGNVIYFHIIRK 426
                  446777899999987654..7779***********..9999999**************************88888889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-226104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4248102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-238106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-219100No hitNo description
PfamPF023624.6E-161197IPR003340B3 DNA binding domain
SMARTSM010197.6E-1511102IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-17162253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-16163258IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.843164259IPR003340B3 DNA binding domain
CDDcd100171.53E-12166257No hitNo description
SMARTSM010193.4E-8167259IPR003340B3 DNA binding domain
PfamPF023623.0E-11179256IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17327425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17329426IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112332427IPR003340B3 DNA binding domain
CDDcd100177.08E-12334425No hitNo description
SMARTSM010197.6E-6335427IPR003340B3 DNA binding domain
PfamPF023621.9E-13347426IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTRKPKRSPS FFKVLVGDFV TKLKIPPAFV KYVLKGKVPK KFSLYSDSGN SWRVRVEVQQ  60
GSYFFNSGWS KFVKYHGLEI GDFLVFFLVD SSTFDVFIYN RTACAKNSIL AAKKPKGRPL  120
GGNRQIEQTP SQKCTSASKK PRAVSRARNV SQEVEFITEE APKHVSFVLV VKKYLKYYVF  180
IPRYFAKETG LGKESITIIK GPRGGMWPMN TTESGRQVRL GGGWSQFLHE NDIVVGDTLL  240
FQHIPNAGNL VHVQILNKAG YRNHGRGGRR GRQNKQANAS EKNTIIAIKQ KRGPPCRQIE  300
EPNSKITKGL SIEGETDITR KDEFESELTP KKASFVVVLK QYQKFYIPVP TSVAKEMGLT  360
KEPSTVIKDS KGRKWRLNIL VYARSVHLGA GWSKFMEENK LEVGDTLLFQ HIPNTGNVIY  420
FHIIRKARDG NHGKRNN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472261.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A0D2QEJ40.0A0A0D2QEJ4_GOSRA; Uncharacterized protein
STRINGGorai.003G020600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-19B3 family protein