PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G1772

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 690aa MW: 75109.7 Da PI: 6.7833

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1772	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	272	292	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gh_A02G1772 272 PCPDFHK-GACRRGDICEYAHG 292 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00204	3.51E-12	15	135	No hit	No description
SuperFamily	SSF48403	1.23E-14	15	150	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.9E-16	40	147	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	9.6E-8	53	126	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.048	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	15.406	57	150	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.33	92	124	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.766	92	127	IPR002110	Ankyrin repeat
SMART	SM00356	8.9E-4	267	293	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	272	292	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.389	272	294	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	300	330	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	36	302	325	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MNRLTLETED IFAILLELAA NNDVEGLKRT IEHDPSVVDE VGLWYGRRKG SKQIVHEERT 60 ALMVAATYGS IGVIKLILSS SDADVNRVCG HEKSTALRCA ASGGTVNAVD VVKLLLAAGA 120 DANMVDANGH RPVDIIGFPP KLQAVKLTLQ ELLATESSVI EQNLRVSTAV ANSGSLSPSR 180 DNGSPSCSDS LPKLKSTAAP ISTLEKKEYP MDPSLPDIKN SIYSTDEFRM YSFKVRPCSR 240 AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFHKGA CRRGDICEYA HGVFECWLHP 300 AQYRTRLCKD GINCARRVCF FAHTAEELRP LYVSTGSAVL SPRSGTSAAT AMDFAAALSL 360 LPGSPSSVSV MSPSPFTPPI SPSAKGMPHS NVAWPQPNVP ALHLPGSNLQ LIRLRSSLNA 420 RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ PSMSSNSMNR SGRLKTLTPS NLEDLFSTES 480 SSPQYSDQAL AAVVFSPSHK SAVLNQFQQQ SSMLSPINTN FSPKSKEHPL LQVSLSGRMS 540 PRNVEPISPM SSRVSMLAQL EKQQFRCLSS RELGSDSPAS ISSPVNSWSK WGSSNGKPDW 600 AVNADELGKH HASFELSNGD EPDLSWVQSL VKESPTEMKE KMKASVLDVP SNASKSEGSN 660 TNSQVDPLDH TVLGAWLEQM QLDQLVALQN

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MNRLTLETED IFAILLELAA NNDVEGLKRT IEHDPSVVDE VGLWYGRRKG SKQIVHEERT  60
ALMVAATYGS IGVIKLILSS SDADVNRVCG HEKSTALRCA ASGGTVNAVD VVKLLLAAGA  120
DANMVDANGH RPVDIIGFPP KLQAVKLTLQ ELLATESSVI EQNLRVSTAV ANSGSLSPSR  180
DNGSPSCSDS LPKLKSTAAP ISTLEKKEYP MDPSLPDIKN SIYSTDEFRM YSFKVRPCSR  240
AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFHKGA CRRGDICEYA HGVFECWLHP  300
AQYRTRLCKD GINCARRVCF FAHTAEELRP LYVSTGSAVL SPRSGTSAAT AMDFAAALSL  360
LPGSPSSVSV MSPSPFTPPI SPSAKGMPHS NVAWPQPNVP ALHLPGSNLQ LIRLRSSLNA  420
RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ PSMSSNSMNR SGRLKTLTPS NLEDLFSTES  480
SSPQYSDQAL AAVVFSPSHK SAVLNQFQQQ SSMLSPINTN FSPKSKEHPL LQVSLSGRMS  540
PRNVEPISPM SSRVSMLAQL EKQQFRCLSS RELGSDSPAS ISSPVNSWSK WGSSNGKPDW  600
AVNADELGKH HASFELSNGD EPDLSWVQSL VKESPTEMKE KMKASVLDVP SNASKSEGSN  660
TNSQVDPLDH TVLGAWLEQM QLDQLVALQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	52	GRRKGSKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016742707.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016742708.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U8NXB0	0.0	A0A1U8NXB0_GOSHI; zinc finger CCCH domain-containing protein 30-like
STRING	Gorai.003G093600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]