PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G1568

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 542aa MW: 56102.9 Da PI: 8.7936

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1568	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gh_A02G1568 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	11.1	0.0012	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Gh_A02G1568 136 WKCDKCSKKYAVQSDWKAHSKIC 158 58*****************9876 PP
3	zf-C2H2	11.5	0.00095	166	184	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Gh_A02G1568 166 DCGTVFSRRDSFITHRAFC 184 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.46E-7	59	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	60	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.0E-4	124	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.46E-7	131	156	No hit	No description
SMART	SM00355	150	136	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MPVDDYSSTV SGDASVSSTG NQNLPPKSTV KKKRNLPGMP DPDAEVIALS PTTLLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVKKRV YVCPEPTCVH HDPSRALGDL 120 TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH 180 RAFCDALAVE SAKTQTNPSS ESDPKVQAAD SSPRRSPPAA SPPVSAPSAI TSSDIRIQSS 240 DPSTVVEEAP APAPAPSPPP AGLNGSSSSS VSLVSSGCNS SSSSVFSNLF TSTTVSASIH 300 PPQPLAPAPP LVGLNGSCSG SVSLVSSGAS SSSSSGVFAS LFASSTVSAS IQPPQTPALT 360 NLIRADLAPS TSIEPISLCL STSHGSSIFG TTGQERRQHA PPLQPAMSAT ALLQKAAQMG 420 AAASNASLLR GLGIVSSSAP QENLQWGQAQ VDPDNASIAA GLGLGLPCDG SSGLKELMMG 480 TPVFGPKQTT LDFLGLGVAA GGNPNASLSA LITSIGSGFD ATTAAASFRG GDYTSKDIGR 540 SS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MPVDDYSSTV SGDASVSSTG NQNLPPKSTV KKKRNLPGMP DPDAEVIALS PTTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVKKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH  180
RAFCDALAVE SAKTQTNPSS ESDPKVQAAD SSPRRSPPAA SPPVSAPSAI TSSDIRIQSS  240
DPSTVVEEAP APAPAPSPPP AGLNGSSSSS VSLVSSGCNS SSSSVFSNLF TSTTVSASIH  300
PPQPLAPAPP LVGLNGSCSG SVSLVSSGAS SSSSSGVFAS LFASSTVSAS IQPPQTPALT  360
NLIRADLAPS TSIEPISLCL STSHGSSIFG TTGQERRQHA PPLQPAMSAT ALLQKAAQMG  420
AAASNASLLR GLGIVSSSAP QENLQWGQAQ VDPDNASIAA GLGLGLPCDG SSGLKELMMG  480
TPVFGPKQTT LDFLGLGVAA GGNPNASLSA LITSIGSGFD ATTAAASFRG GDYTSKDIGR  540
SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	132	196	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-32	132	196	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20151	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269\|PubMed:21571950}.
Uniprot	TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269\|PubMed:21571950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622160.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0B0PEB2	0.0	A0A0B0PEB2_GOSAR; Zinc finger MAGPIE-like protein
STRING	Gorai.003G016200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-109	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]