PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G1488

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 291aa MW: 32215.5 Da PI: 10.0521

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1488	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	2.9e-31	222	279	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYeg+Hnh+ Gh_A02G1488 222 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDASMLIVTYEGDHNHS 279 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.7E-13	171	218	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.6E-33	209	279	IPR003657	WRKY domain
PROSITE profile	PS50811	30.446	215	281	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	217	279	IPR003657	WRKY domain
SMART	SM00774	3.3E-37	220	280	IPR003657	WRKY domain
Pfam	PF03106	9.1E-27	222	278	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MEETAVQEAA SGLESVEKLI KLLSQTQQNY TSNNQEKKFQ SSPTRSSMDL EMDCKVTAEA 60 AVSKFKKVIS LLGRTRTGHA RFRRAPLPPP PTTTVTEHET KVYQPTPIQQ IPLPVTTYLE 120 RKESPTTTIN FSYSSTTTTA DNNSNKQPSS STFQISNLSS AGKPPLSSSL KRKCSIENLG 180 SGIKCNSSSC RCHCSTKKRK QRTKRVVKVP AISLKMADIP PDDYSWRKYG QKPIKGSPHP 240 RGYYKCSSVR GCPARKHVER ALDDASMLIV TYEGDHNHSL SVAETTILES S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	216	280	10	73	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3815	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU207867	0.0	GU207867.1 Gossypium hirsutum WRKY15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719058.1	0.0	PREDICTED: probable WRKY transcription factor 15 isoform X1
Swissprot	O22176	1e-87	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A1U8M076	0.0	A0A1U8M076_GOSHI; probable WRKY transcription factor 15 isoform X1
STRING	Gorai.003G026600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	3e-72	WRKY DNA-binding protein 15

Publications ? help Back to Top
Yu F, et al. GhWRKY15, a member of the WRKY transcription factor family identified from cotton (Gossypium hirsutum L.), is involved in disease resistance and plant development. BMC Plant Biol., 2012. 12: p. 144 [PMID:22883108] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]