PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A02G1249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 239aa MW: 27046.1 Da PI: 7.9565 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.4 | 7.1e-33 | 51 | 105 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gh_A02G1249 51 KPRYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKESE 105 779*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.7E-30 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-30 | 53 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.576 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-32 | 163 | 238 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.11E-20 | 164 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.7E-26 | 176 | 232 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MEFEDQEEQE EEMGLTPSYD SLGNSSRLKM SGVEPGSVTP TGQQQQQQQR KPRYRECLKN 60 HAVGIGGHAL DGCGEFMPAG TEGTLDALKC AACNCHRNFH RKESELGSPN SVHTTDLYFH 120 HHHHHQPPQF APYFRAPTGY LHVAGQQRPL ALPSTSGGGG HSREDQEDAS NQGSSRKRFR 180 TKFTQEQKEK MLSLAERLGW RIQKHDEEIV QQFCNETGVK RHVLKVWMHN NKHTLGKKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-27 | 177 | 234 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.2124 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016742313.1 | 1e-178 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X1 | ||||
Swissprot | A2Z259 | 4e-80 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 4e-80 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1U8NW55 | 1e-177 | A0A1U8NW55_GOSHI; zinc-finger homeodomain protein 2-like isoform X1 | ||||
STRING | Gorai.003G042700.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-73 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|