PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 68aa MW: 8300.28 Da PI: 6.0852 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.8e-10 | 41 | 66 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 r +WT+eE++++++a +++G+g W+ I Gh_A02G0904 41 REKWTEEEHQRFLEALRLYGSG-WRQI 66 789*******************.*998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.170.10 | 2.1E-11 | 1 | 39 | IPR000789 | Cyclin-dependent kinase, regulatory subunit |
SuperFamily | SSF55637 | 1.22E-10 | 2 | 41 | IPR000789 | Cyclin-dependent kinase, regulatory subunit |
PRINTS | PR00296 | 1.1E-5 | 3 | 17 | IPR000789 | Cyclin-dependent kinase, regulatory subunit |
SMART | SM01084 | 0.0023 | 3 | 54 | IPR000789 | Cyclin-dependent kinase, regulatory subunit |
Pfam | PF01111 | 1.1E-9 | 4 | 40 | IPR000789 | Cyclin-dependent kinase, regulatory subunit |
PRINTS | PR00296 | 1.1E-5 | 18 | 32 | IPR000789 | Cyclin-dependent kinase, regulatory subunit |
SuperFamily | SSF46689 | 2.02E-7 | 32 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.162 | 36 | 68 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-7 | 40 | 66 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.1E-6 | 41 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.3E-8 | 41 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00154 | 43 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016538 | Molecular Function | cyclin-dependent protein serine/threonine kinase regulator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGQIQYSEKY FDDTYENRNV VLHPEVAKLL PKNHLLSDHQ REKWTEEEHQ RFLEALRLYG 60 SGWRQIEV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. {ECO:0000250}. | |||||
UniProt | Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17443292}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026417785.1 | 1e-15 | cyclin-dependent kinases regulatory subunit 1 | ||||
Swissprot | A2XCH8 | 4e-16 | CKS1_ORYSI; Cyclin-dependent kinases regulatory subunit 1 | ||||
Swissprot | Q6PS57 | 4e-16 | CKS1_ORYSJ; Cyclin-dependent kinases regulatory subunit 1 | ||||
TrEMBL | A0A2P5YUT3 | 2e-41 | A0A2P5YUT3_GOSBA; Cyclin-dependent kinases regulatory subunit |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6356 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.2 | 1e-12 | MYB_related family protein |
Publications ? help Back to Top | |||
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