PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0865
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 117aa    MW: 13038.8 Da    PI: 10.2176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0865genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-145099255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +g+ + eIrdp     +  +r++lg+f+tae Aa+a+++a +k++g
  Gh_A02G0865 50 RYRGVRKRP-WGKRATEIRDP-----HkaARVWLGTFDTAEAAARAYEEATLKFKG 99
                 7********.89989*****7.....337*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-2950108IPR001471AP2/ERF domain
PfamPF008472.6E-95099IPR001471AP2/ERF domain
SMARTSM003802.4E-2950113IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1950108IPR016177DNA-binding domain
PROSITE profilePS5103222.850107IPR001471AP2/ERF domain
PRINTSPR003675.0E-115162IPR001471AP2/ERF domain
PRINTSPR003675.0E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEGDETSAQL VESAAPRVQR IAEETTSIVA PAAEIVAGAA YEETGERRRR YRGVRKRPWG  60
KRATEIRDPH KAARVWLGTF DTAEAAARAY EEATLKFKGS RAKLNFPELV RLVPQSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2149107160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2149107463ATERF1
3gcc_A2e-2149107463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERRRRY
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670041.12e-38PREDICTED: ethylene-responsive transcription factor ERF110-like
RefseqXP_016730956.12e-38PREDICTED: ethylene-responsive transcription factor ERF110-like
SwissprotQ9FH544e-32EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8MVU44e-37A0A1U8MVU4_GOSHI; ethylene-responsive transcription factor ERF110-like
TrEMBLA0A4D8ZF012e-35A0A4D8ZF01_SALSN; EREBP-like factor
STRINGXP_010681129.12e-33(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-19ethylene response factor 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]