PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0775

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 344aa MW: 39075.8 Da PI: 6.9064

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0775	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4e-11	63	99	4	40
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 +k +rr+++NReAAr+sR+RKka++++Le +L + Gh_A02G0775 63 DKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQ 99 799**************************84433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.2E-8	55	109	No hit	No description
SMART	SM00338	3.2E-6	60	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	62	106	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	63	102	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.54E-7	64	106	No hit	No description
CDD	cd14708	2.21E-22	64	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-28	151	226	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MTIYEQLNQI SRWGDSFNRG DSPNTGSSTI VEGGVRLENK AGYISCDQVE PSRSDQETNK 60 PIDKTQRRLA QNREAARKSR LRKKAYVQQL ESSRLKLAQL EQELERTRQQ GIYISSPSDT 120 GYFGLSGTVN SGITAFEMEY GHWVDVQNKQ TCELRSALQA HITDIELQIL VEHGLNHYCN 180 LFRMKADAAK ADVFYLNSGI WRTSAERFFH WIGGFRPSEL LNVVMSHIEP LTDQQQLEVC 240 NLRQSSQQAE DALSQGIDKL QQNFSCSVAS DLSWGHYRAQ MAVATDIIEA LEGFVNQADH 300 LREQTLLQMV RILTTHQAAR GLLALGDYFH RLRALSSLWA THPR

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MTIYEQLNQI SRWGDSFNRG DSPNTGSSTI VEGGVRLENK AGYISCDQVE PSRSDQETNK  60
PIDKTQRRLA QNREAARKSR LRKKAYVQQL ESSRLKLAQL EQELERTRQQ GIYISSPSDT  120
GYFGLSGTVN SGITAFEMEY GHWVDVQNKQ TCELRSALQA HITDIELQIL VEHGLNHYCN  180
LFRMKADAAK ADVFYLNSGI WRTSAERFFH WIGGFRPSEL LNVVMSHIEP LTDQQQLEVC  240
NLRQSSQQAE DALSQGIDKL QQNFSCSVAS DLSWGHYRAQ MAVATDIIEA LEGFVNQADH  300
LREQTLLQMV RILTTHQAAR GLLALGDYFH RLRALSSLWA THPR

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109873872	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016741968.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016741969.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016741970.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016741971.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016741972.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016741973.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Refseq	XP_016741974.1	0.0	PREDICTED: transcription factor TGA3-like isoform X1
Swissprot	Q93ZE2	1e-147	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A1U8NSL8	0.0	A0A1U8NSL8_GOSHI; transcription factor TGA3-like isoform X1
STRING	Gorai.005G092400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-142	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]