PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 36003.9 Da PI: 6.9945 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.6e-21 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + +r++lg+f+tae Aa+a+++a+++++g Gh_A02G0655 123 RYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAARAYDEAALRFRG 172 7********.**********9...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-15 | 123 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 123 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.791 | 123 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 123 | 181 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-33 | 123 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 124 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.21E-16 | 131 | 182 | No hit | No description |
PRINTS | PR00367 | 7.6E-12 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MFFGSQSHHQ ATEMSAMVSA LTHVVSGQRF AAWDCYPSNM DATCFQHTQT GSASGLAPCK 60 IGQKRGRAED VTAHLVQTSS HAHSSSPATS VTEETETAAT TSMETAGEAA AASNEETGEP 120 RRRYRGVRQR PWGKWAAEIR DPNKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP 180 ENVRVVVPQP MQNFPTIQTP VSSSQTTHFP PYYQSPPTAD MLRDYWQYSQ LLQSCNDFHE 240 QQATSLLNQM IQSSQLPNVQ PPLLSSSLSP PLLSSPSSSA SASFPLLFGE QHQMGISRAP 300 FNQTQASQLD FPVPPPPWSH PGHHSSSTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 122 | 183 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23656 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647909.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A0D2SCK3 | 0.0 | A0A0D2SCK3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G078100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15224 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 4e-17 | ERF family protein |