PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G0549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 34251.1 Da PI: 6.6192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.1e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Gh_A02G0549 24 RGPWTVEEDFKLINYIAIHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Gh_A02G0549 77 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.787 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-31 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.56E-13 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.502 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDGKKRGCIG IVQSEEDHEM DLIRGPWTVE EDFKLINYIA IHGEGRWNSL ARCAGLKRTG 60 KSCRLRWLNY LRPDIRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAAGS TTTTTTTTAV VPSASVMGKD 180 FSTQVTPSYT SENSSTATAA SSESFEAQVS PVSDLTNCYN NGFQVTNNNN PNPDYNFQAC 240 SSQVDYYEHS LSSANYYNHG DGGCLDLQTN NYPMLDGADL SDNLLNAEDF LFLQQQFNFN 300 M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 21 | 124 | 4 | 106 | B-MYB |
1gv2_A | 1e-25 | 21 | 118 | 1 | 97 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633105.1 | 0.0 | PREDICTED: transcription factor MYB108 | ||||
Swissprot | Q9FGY3 | 2e-89 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A0D2SBZ9 | 0.0 | A0A0D2SBZ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G068900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 8e-87 | myb domain protein 78 |
Publications ? help Back to Top | |||
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