PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0029
Common NameWRKY5
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 306aa    MW: 34666.3 Da    PI: 6.1786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0029genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.85.9e-25132193159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgy+WrKYGqK++ ++++prsY+rCt++   gC+++k+v++ ++dp   e++Y g+H+++
  Gh_A02G0029 132 VDDGYAWRKYGQKQILNANHPRSYFRCTHKtdqGCQATKQVQKLEDDPPKYETIYYGHHTCK 193
                  59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-26118194IPR003657WRKY domain
PROSITE profilePS5081120.851127190IPR003657WRKY domain
SuperFamilySSF1182901.1E-24128193IPR003657WRKY domain
SMARTSM007746.9E-38132194IPR003657WRKY domain
PfamPF031063.8E-25133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSWNTKKAIE ELVRGKELTK QLRDLLTKSL TDDGFVNSED LVLKICDTFA NTLSLLTNSN  60
TTTTTAVADY YYNDDFNDVS QKPTINITSD GRKSEDSGDS IKSPPSTHRD RRGSYKRRKC  120
VDSRKKITSA LVDDGYAWRK YGQKQILNAN HPRSYFRCTH KTDQGCQATK QVQKLEDDPP  180
KYETIYYGHH TCKNMLKSCH FMVEDSTCNN DSSILLSFAN NSTLTNKQGN DNPFFSSVKQ  240
ESKEDYKPIS EITYNGSSSS EYLLSPHHHQ LSTFDLSSAD MTVLSPDHDV LSDVVDSVDL  300
DDLLQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-23132193869OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.252080.0stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310710.0KF031071.1 Gossypium hirsutum WRKY transcription factor 5 (WRKY5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314323.10.0probable WRKY transcription factor 70
TrEMBLA0A059Q7Q80.0A0A059Q7Q8_GOSHI; WRKY transcription factor 5
STRINGGorai.005G003900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-34WRKY DNA-binding protein 70