PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G2038
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 232aa    MW: 26517.9 Da    PI: 6.6231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G2038genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141561248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g WT+eEd +l  +++++G  +W+  ++  g+ R++k+c++rw +yl
      Gh_A01G2038 15 GTWTAEEDRKLTAYITRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                     78*****************99************************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEde ++ +++ lG++ W++Ia++++ gRt++++k++w++ 
      Gh_A01G2038  67 RGNFTKEEDETIITLHESLGNR-WSAIAAMLP-GRTDNEIKNHWHTN 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.954961IPR017930Myb domain
SuperFamilySSF466891.45E-2912108IPR009057Homeodomain-like
SMARTSM007178.5E-81363IPR001005SANT/Myb domain
PfamPF002491.3E-111561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231568IPR009057Homeodomain-like
CDDcd001677.55E-91661No hitNo description
PROSITE profilePS5129426.41662116IPR017930Myb domain
SMARTSM007178.7E-1866114IPR001005SANT/Myb domain
PfamPF002497.0E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2769116IPR009057Homeodomain-like
CDDcd001672.17E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVKKPCCDKS GLRQGTWTAE EDRKLTAYIT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TKEEDETIIT LHESLGNRWS AIAAMLPGRT DNEIKNHWHT NLKKHVKHKP  120
STTKLHDKYT NNQNLNDDHL QINPIIPPLI LESSPPPPLS TNTQSPFTTT DNSVESTKAD  180
SVSDFWSEPF LLDILSDDLP TMGASAGFEF DLLDGEILSP FGFYDDLEPF SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639943.11e-173PREDICTED: myb-related protein Myb4-like
SwissprotQ6K1S63e-58MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A0D2NGT11e-170A0A0D2NGT1_GOSRA; Uncharacterized protein
STRINGGorai.002G016800.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2426334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.18e-59myb domain protein 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]