PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G1962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 31618.9 Da PI: 9.1428 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.3 | 2.4e-24 | 35 | 118 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k+lWe +s +++e+g++rs++qCk+kw+nl +ryk ++ e++ ++++++p++++l+ Gh_A01G1962 35 QWSIQETKEFLMIRAELDTNFMETKRNKQLWEFISTRLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEEA--KRQQQFPFYNDLQ 118 7********************************************************************95..66678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.08E-20 | 34 | 99 | No hit | No description |
Pfam | PF13837 | 6.0E-20 | 35 | 120 | No hit | No description |
PROSITE profile | PS50090 | 7.515 | 36 | 92 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEGLHHHQYY HRQHHQQQHQ QQAMNVNVDV DRLPQWSIQE TKEFLMIRAE LDTNFMETKR 60 NKQLWEFIST RLKEKGYNRS AEQCKCKWKN LVTRYKGCEM VEEEAKRQQQ FPFYNDLQAI 120 FSARKQTTLK KLCSDKEEDK GRYRGKEKGK KGVSISGSTS ESINDGNDIK EILKCFMRQQ 180 MEMEIQWREA LEERENERRL KEMEWRRTME ALENERVMMD IRWREKEEQR RIREEARSER 240 IDALVTTLLN KLTRDDHKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749199.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 6e-55 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1U8PG57 | 0.0 | A0A1U8PG57_GOSHI; trihelix transcription factor GT-3b-like | ||||
STRING | Gorai.002G262900.1 | 1e-166 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-48 | Trihelix family protein |
Publications ? help Back to Top | |||
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