PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1106

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 716aa MW: 77807.4 Da PI: 5.9182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1106	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.8e-08	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg Gh_A01G1106 305 PCPDFRK-GTCRRGDMCEYAHG 325 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.7E-17	40	175	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.91E-17	85	179	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.85E-16	86	165	No hit	No description
SMART	SM00248	0.0012	87	117	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	18.112	87	163	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.6E-10	87	156	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	4.9E-5	88	103	IPR002110	Ankyrin repeat
SMART	SM00248	9.9E-5	122	154	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.342	122	157	IPR002110	Ankyrin repeat
PRINTS	PR01415	4.9E-5	141	155	IPR002110	Ankyrin repeat
SMART	SM00356	3.1E-6	300	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-5	305	325	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	305	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.911	305	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-4	333	363	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	65	335	358	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MCCGSERLNS KLTPRTSNSS FEDNRVPRVD MNHLTVVTED TFASLLELAA NNDVEGFKRS 60 MEHDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVASMYGS IDVIKLILSS SDADVNLVCG 120 RDKSTALHCA ASGGADNVID VVKLLLAAGA DVNSVDANGH LPVDVIVVPP KLGAVKSTLE 180 ELLAIEGSGF DWNSQVAAVA NFDSLPLLPL KENGSLLSGS DSPMKSKPID APISSASEKK 240 EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGTCRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTADE 360 LRPLYVSTGS AVPSPRSSTS GATAMDFAAA MSLLPGSPSS VSVMSPSPFS PPMSPSMNGM 420 SQSNVGWPQP NVPALHLPGS NLQSSRLRSS LNARDIQAED FNLLSDFDVQ QLQLMNELPG 480 LTQPSMSSSS FNRSGRMKTL TPSNLDDLFS AESSSPRYSD QVLAAAVFSP THKSAVLNQF 540 QQQQNMLSPI NTTFSPKSIE HPLLQASLSG RMSPRNVEPI SPMSSRVSML AQREKQQQFR 600 SLSSRELGSG SAAIVGSPVN SWSKWGSSNG KPDWAVNADG LDKHRRSSSF ELGNGDEPDL 660 SWVQSLVKES PTEIKEKIAA PVSGEGSSMN ADPVDNAVLG AWLEQMQLDQ LVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MCCGSERLNS KLTPRTSNSS FEDNRVPRVD MNHLTVVTED TFASLLELAA NNDVEGFKRS  60
MEHDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVASMYGS IDVIKLILSS SDADVNLVCG  120
RDKSTALHCA ASGGADNVID VVKLLLAAGA DVNSVDANGH LPVDVIVVPP KLGAVKSTLE  180
ELLAIEGSGF DWNSQVAAVA NFDSLPLLPL KENGSLLSGS DSPMKSKPID APISSASEKK  240
EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGTCRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTADE  360
LRPLYVSTGS AVPSPRSSTS GATAMDFAAA MSLLPGSPSS VSVMSPSPFS PPMSPSMNGM  420
SQSNVGWPQP NVPALHLPGS NLQSSRLRSS LNARDIQAED FNLLSDFDVQ QLQLMNELPG  480
LTQPSMSSSS FNRSGRMKTL TPSNLDDLFS AESSSPRYSD QVLAAAVFSP THKSAVLNQF  540
QQQQNMLSPI NTTFSPKSIE HPLLQASLSG RMSPRNVEPI SPMSSRVSML AQREKQQQFR  600
SLSSRELGSG SAAIVGSPVN SWSKWGSSNG KPDWAVNADG LDKHRRSSSF ELGNGDEPDL  660
SWVQSLVKES PTEIKEKIAA PVSGEGSSMN ADPVDNAVLG AWLEQMQLDQ LVAQQN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.7326	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738261.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U8NGT9	0.0	A0A1U8NGT9_GOSHI; zinc finger CCCH domain-containing protein 30-like
STRING	Gorai.002G152300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]