PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1050
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 673aa    MW: 70862.6 Da    PI: 6.8505
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1050genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08204249145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++W++ Ed+ l+ av++ G g+W+ I r      Rt+ q+  rw 
      Gh_A01G1050 204 RKPWSEAEDLELIAAVQKCGVGNWANILRGDFkGDRTASQLAQRWT 249
                      789************************98422359*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.342199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-12200252IPR009057Homeodomain-like
SuperFamilySSF466892.66E-12201257IPR009057Homeodomain-like
SMARTSM007175.4E-11203254IPR001005SANT/Myb domain
PfamPF002493.9E-7204249IPR001005SANT/Myb domain
CDDcd116608.89E-14205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MIQNTKKQKK GSISEEDIST LLQRYTATTV LALLQEVAQF PGVKLDWNAL IKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGAAPLDD DSDLEYELEP CPSVSSETSA EAAACVKVLI  120
ASGLPNDSSL ANSSMVDAPL TINIPNARSF RVSSENLQPT CSMPGTNITV PVSVQKKILP  180
SVTLAETMEG NGPAGANLPA RRKRKPWSEA EDLELIAAVQ KCGVGNWANI LRGDFKGDRT  240
ASQLAQRWTV IKKRCGNLNV EGNSAIPQLS EAQLATRSAL SLALDMPDKN LTAACTNNPG  300
LKIMSSSAPP TAGGEASVQA QSQVQQGPLA SVEAQIQSQQ GPIASVSSRN RSQEGPITSA  360
SPQNPSQQGP VASVQVPNQS QQGSMPTKTS PRGSSGSTLK SRVTLKKAPA KPFSTTGSIL  420
DATAVAAGAR IGSPEAAASL LKAAQSKNAI HIMTTGGSSV KPVIPSGTSS QYVCTGLTAE  480
AHSSPVTSST LHPGSVKPAT QRVELTSSVS LSINAPMQQC NAVTSGTAVE VSPKEDLEIK  540
GSVSDSLPKE QVRENRAYVS KNERGEEVKD HKEALTNPGS ELRNIVAEAE HPNEKLMVDG  600
DQVGVKANPV EESVNASDSK DCLLVKKSTT QPTTEESCRN HSMTEMPAKA SSLSDGCAKN  660
LEVLSTAETG RAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.201130.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5829365e-31JX582936.1 Gossypium hirsutum clone NBRI_GE15865 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016702843.10.0PREDICTED: uncharacterized protein LOC107917932
TrEMBLA0A1U8KPC60.0A0A1U8KPC6_GOSHI; uncharacterized protein LOC107917932
STRINGGorai.002G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-71MYB_related family protein