PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 217aa MW: 25028.2 Da PI: 9.4971 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.8 | 1.4e-21 | 83 | 142 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e++++kl +++ ++V++WFqN++a+e++ Gh_A01G0998 83 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEKLgkygKIEGKNVFYWFQNHKARERQ 142 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 118 | 4.4e-38 | 83 | 144 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Gh_A01G0998 83 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEKLGKYGKIEGKNVFYWFQNHKARERQKQ 144 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.12E-13 | 74 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.317 | 78 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-8 | 80 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.51E-5 | 83 | 144 | No hit | No description |
Pfam | PF00046 | 3.1E-19 | 83 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 84 | 142 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGNMKMHQLA CGFWEQEPLL SLGCKRLRPL APKLHSNSTY TTVSSFDLKS FIRPDSGPRK 60 LGNGPSEDNN RHSPPVETHP GGTRWNPTQE QIGILEMLYR GGMRTPNAQQ IEQITEKLGK 120 YGKIEGKNVF YWFQNHKARE RQKQKRSSLG LTHCPRSSAP ITPITLDTRE ETMEREEDSL 180 CKRKCRSWSF EEKDSRSSSK EDENRTLELF PLHPESR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15831 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701982.1 | 1e-162 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 8e-71 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A1U8KHR1 | 1e-160 | A0A1U8KHR1_GOSHI; WUSCHEL-related homeobox 4-like | ||||
STRING | Gorai.002G134800.1 | 1e-158 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5980 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-64 | WUSCHEL related homeobox 4 |