PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0961
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 404aa    MW: 46364.6 Da    PI: 7.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0961genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-19401201297
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ++rl +p kfa+++++k   + t+tl+ +sg  W+v+l+++   ++ ++ +GWk Fvk++ L ++Df++Fk++g s f   v +f
  Gh_A01G0961  40 FLQRLEIPEKFAKNIKKK--LPETVTLKGPSGIIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DVLMF 120
                  56799*******888755..888****************54443.4599************************998888..66655 PP
2B345.61.3e-14279359184
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  f  +++p +v+++  + +p   ++++   k   + +++l+  + r+W+ ++ y ++++   l++GW++Fv++n+L+e D++vF+ 
  Gh_A01G0961 279 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVFQP 359
                  677899********************42.3..334676655.78*******8877776678**********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-2228121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.69229123IPR003340B3 DNA binding domain
SMARTSM010191.4E-1632123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-2232121IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-2037121No hitNo description
PfamPF023622.9E-1641117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-20275374IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-19279369No hitNo description
PROSITE profilePS5086311.984279377IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-19279368IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-12279372IPR003340B3 DNA binding domain
PfamPF023625.4E-13279360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MRLWITQMED TCKDCRDWEE EIFWTHFQCV HFSQFLHGDF LQRLEIPEKF AKNIKKKLPE  60
TVTLKGPSGI IWDVRLTVDD DDTLFFNGGW KTFVKDHSLV ANDFLIFKYN GVSHFDVLMF  120
DGKSLCEKAS SYFVRKCMHT ESDATHQTKR KVNENSDEIL HNSSQCGLES GPEKSTNNDM  180
DARPSRKPIN SAASKKKIRN SDNGTRSIHA KQSLVGKELP TFPGEVKVER LETEYEHTTM  240
DGDGDVFGLW HTTGKRFVTQ FEKTNVLLKA QEALTNEGFM IIMKPTHVGR RFYMAVPTAW  300
VAKYLPKDNA DVILRMNKRT WKTRFYYHRS RDCGGLSGGW RNFVNDNNLE EHDVCVFQPA  360
NIGSKPMILD VNIFHVLQKA VPLSQVDPLP SSPELIASTP DMDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.113030.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703014.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016703015.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016703016.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_016703017.10.0PREDICTED: B3 domain-containing protein REM16-like
RefseqXP_017638668.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_017638669.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_017638670.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_017638671.10.0PREDICTED: B3 domain-containing protein REM16
TrEMBLA0A1U8KKP60.0A0A1U8KKP6_GOSHI; B3 domain-containing protein REM16-like
STRINGGorai.002G130300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-80B3 family protein