PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 14010.9 Da PI: 9.2461 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.3 | 2.8e-13 | 4 | 98 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEE.EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWe.vkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f+k lt dv k+ + +p +f+ +h +++ +++t + d sg++We + + +rk+++ v++k W ++v++++L+ gD ++F+++++ +++ + Gh_A01G0393 4 FEKYLTEVDVKKQ--VAIPSDFV-QHlpDYEGGRTITFPVHDVSGKVWEnFGYYIRKGDDYpkPVFQKDWHKYVRDKRLRPGDKIIFRVERNgDNGAP 98 7888877777776..8*******.555955556789999*********8466644666655889************************9988666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-14 | 2 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-13 | 2 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-16 | 2 | 102 | No hit | No description |
Pfam | PF02362 | 1.5E-9 | 4 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MPSFEKYLTE VDVKKQVAIP SDFVQHLPDY EGGRTITFPV HDVSGKVWEN FGYYIRKGDD 60 YPKPVFQKDW HKYVRDKRLR PGDKIIFRVE RNGDNGAPIY TIAAQKKIEL LGSTIWSSEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468654.1 | 9e-75 | PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A2P5XQC4 | 3e-83 | A0A2P5XQC4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G061900.1 | 4e-74 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22252 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 4e-06 | ethylene response DNA binding factor 3 |