PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 20632.4 Da PI: 8.7621 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.5 | 2e-55 | 4 | 159 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG Ct+l svnla + q +a ++ ++ + ++e ++ +++ +++ ++++ Gh_A01G0376 4 SHNSAPEQLCYIPCNLCNIILAVNVPCNSLFETVTVRCGQCTNLCSVNLAASFQSRAGKDV--------QVPNYTSSEYRIDLGSSSRCKNKLPKRAT 93 68899**********************************************9999999885........33344444444443333333223333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ ++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl Gh_A01G0376 94 TINTTTQER-----IVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 159 333444443.....469****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-62 | 8 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.57E-6 | 98 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSSSHNSAPE QLCYIPCNLC NIILAVNVPC NSLFETVTVR CGQCTNLCSV NLAASFQSRA 60 GKDVQVPNYT SSEYRIDLGS SSRCKNKLPK RATTINTTTQ ERIVNRPPDK RHRAPSLYNQ 120 FIKEEIQRIK LNNPDITHRE AFSTAAKNWA RFPHIHFGLM LETDNQPKLN DDSTEPFHQL 180 LK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21659 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526781 | 6e-37 | HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701970.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_016701971.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_016701972.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_017640876.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q8GW46 | 4e-78 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U8KHE6 | 1e-133 | A0A1U8KHE6_GOSHI; axial regulator YABBY 5-like isoform X1 | ||||
TrEMBL | A0A2P5XGS9 | 1e-133 | A0A2P5XGS9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G054200.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-80 | YABBY family protein |
Publications ? help Back to Top | |||
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