PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G0080

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 242aa MW: 27218.4 Da PI: 7.0363

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G0080	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W +eEdell ++v+++G+++W++I+ ++ gR++k+c++rw + Gh_A01G0080 9 RGPWNPEEDELLRKLVQRYGPRNWTAISTSIP-GRSGKSCRLRWCNQ 54 89****************************.*********985 PP
2	Myb_DNA-binding	53.1	7.5e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd ++ +a+++ G++ W+tIar ++ gRt++ +k++w++ Gh_A01G0080 63 AFTAEEDRIIRKAHALCGNK-WATIARLLN-GRTDNAVKNHWNST 105 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.005	4	59	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-30	6	102	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-16	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-19	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-25	10	61	IPR009057	Homeodomain-like
CDD	cd00167	2.82E-14	11	53	No hit	No description
SMART	SM00717	1.4E-14	60	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.347	61	110	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-21	62	110	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-14	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	2.78E-10	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MGQDIDRVRG PWNPEEDELL RKLVQRYGPR NWTAISTSIP GRSGKSCRLR WCNQLSPEVE 60 HRAFTAEEDR IIRKAHALCG NKWATIARLL NGRTDNAVKN HWNSTLKRKF IEDSESEKKP 120 AKSPRTASSS SPSRSDANDL GLGVVANELT QCSRVSTKLT LRSSWNESVD LNNDDDHLSE 180 ENDLKLTAEK HENDSSATVA AAMLPPEILA AIKEMIKKEV RDYMEEFGFK SESVKNAIGN 240 IE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-40	8	110	3	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-40	8	110	3	105	C-Myb DNA-Binding Domain
1msf_C	2e-40	8	110	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721959.1	1e-179	PREDICTED: transcription factor MYB44-like
Swissprot	O23160	6e-65	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A1U8M8V2	1e-178	A0A1U8M8V2_GOSHI; transcription factor MYB44-like
STRING	Gorai.002G009300.1	1e-157	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24269	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-62	myb domain protein r1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]