PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74008.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 335aa    MW: 37460.5 Da    PI: 7.2143
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74008.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-083049626
                -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                C f+++ G C yG+rC++ H+
  EPS74008.1 30 CTFYQK-GACAYGERCRYDHV 49
                9*****.*************7 PP
2zf-CCCH20.11.1e-06117139326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+ fa+ G+C+yG++C  +Hg
  EPS74008.1 117 MPICS-FAAAGECPYGENCANIHG 139
                 57899.*************76665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.5122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5212451IPR000571Zinc finger, CCCH-type
SMARTSM003560.0172550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-52748IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-42948IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-53049IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136114141IPR000571Zinc finger, CCCH-type
SMARTSM003560.008114140IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.71E-13172247No hitNo description
Gene3DG3DSA:3.30.40.105.7E-10178242IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF146342.8E-7182242IPR001841Zinc finger, RING-type
CDDcd001620.00103182242No hitNo description
PROSITE profilePS5008912.342183241IPR001841Zinc finger, RING-type
SMARTSM001841.0E-7183240IPR001841Zinc finger, RING-type
PROSITE patternPS005180207216IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.15270298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601270299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
LCKFFAHGAC LKGETCEYAH NWNAPPNNMC TFYQKGACAY GERCRYDHVK ASRLHQQTSS  60
SSTVTSSTSV GLGCSAHEGS FLPESGPAWQ DTYVHIGAPA TESYDVLAVR GDDQAEMPIC  120
SFAAAGECPY GENCANIHGD LCPSCKKHCL HPFRPLEREE HLKTCEKRQK YLEALTRSQE  180
IECSVCLERV LLKPTAAERK FGILSECSHP FCISCIRNWR GRSPTYGLDV TSALRSCPIC  240
RKLSYFVIPS VVWCFSDEEK EEIVESYKAK LKSIDCKHFD FGNGSCPFGT SCFYKHAYRD  300
GRLEEVVLRH LGAEDGNTVI AKNIRLSDFL SNLRI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844691.11e-177PREDICTED: E3 ubiquitin-protein ligase makorin, partial
SwissprotQ5ZA071e-158C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLS8EDG20.0S8EDG2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N01471.1.p1e-176(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-141C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]
  4. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]