PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73819.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family FAR1
Protein Properties Length: 459aa    MW: 52746.9 Da    PI: 6.7721
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73819.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.5e-2137130190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 
                 +fY ++A++ GFsvrk++s+ s++ g i+kr++vC++ g++  +kk+ + +++r r++ r+gC+a++ ++ke      + w+v ++++ HnHel 
  EPS73819.1  37 DFYGTFARKNGFSVRKERSRLSSQLG-IYKRDLVCYRAGFAPVRKKQlSGENQRDRKSIRCGCDARMYLSKEIvdggASLWCVVQFSNVHNHELL 130
                 6*********************8888.**************9999997788999****************9977666789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1937130IPR004330FAR1 DNA binding domain
PfamPF105513.9E-19262348IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
DDGEAESIKN DPQPTEQQQI FTPYVGMVFK SDADALDFYG TFARKNGFSV RKERSRLSSQ  60
LGIYKRDLVC YRAGFAPVRK KQLSGENQRD RKSIRCGCDA RMYLSKEIVD GGASLWCVVQ  120
FSNVHNHELL EDDQLRLLPA YRKINEADQE RILLLSRAGF PINRIVKVFE LEKGIGGAAL  180
SFLERDVRNF IQNRRRKLVG VQEEGDLEYD LVELLEACRG SKEADQFFTY DASIDENGRV  240
ENVAWCFGDS IRSYDTFGDA VYLESSYRST AYAMFFVAFL GIDNHGELLC LGCCLLQDES  300
TSSFSWALKV FLRFMKGRSP QTIVTDADHR IREAVKKELP NTKHVIPLHR ILGRIPGWFS  360
VPLGSRFPEF RYEFEEVLCS LECSDEFEFQ WNQMSSHLRL NADRHISLLF TLRSFWTLPY  420
TRGCFTARIN SASYSKSVDT FMNRLLNSPP HLLGIFQQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849238.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_012849239.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_012849241.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_012849242.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR41e-161FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLS8D1Y00.0S8D1Y0_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01435.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-158FAR1-related sequence 10
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]