PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73774.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 200aa    MW: 22622.6 Da    PI: 9.723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73774.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-104491455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  EPS73774.1 44 SHSLAERMRRERISERMKLLQALVPGC----DKVTGKAVMLDEIINYVQSLQ 91
                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-1738110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-113895No hitNo description
PROSITE profilePS5088815.4284090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1640104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-74491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-114696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLSKRKSKQP PSPPSSSPKK QKKNGETPTD YVHVRARRGQ ATDSHSLAER MRRERISERM  60
KLLQALVPGC DKVTGKAVML DEIINYVQSL QNQVEFLSMK LASVNPMYDF GMDLTSLMVN  120
HQQNLIQESS SSPSNVYSHH FLHNSPTSVL LLQQNPNLEA GVRGPHTHGA GFVWEELEDQ  180
RRSKDDRHVG FIPSTSFPFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954RMRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842728.13e-59PREDICTED: transcription factor bHLH137
SwissprotQ93W882e-49BH137_ARATH; Transcription factor bHLH137
TrEMBLS8D1V71e-147S8D1V7_9LAMI; Uncharacterized protein
STRINGMigut.O00350.1.p1e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]