PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 26127.5 Da PI: 8.6027 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 102 | 157 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ +++k q Lee F++ ++++ +++ +A++l+Lt rqV vWFqNrRa+ k EPS73415.1 102 RRKKLRLSKAQSALLEESFARYSTLNPMQKQGIARELKLTPRQVEVWFQNRRARTK 157 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 109.9 | 1.8e-35 | 103 | 191 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlsk q++lLEesF + ++L+p +K+ +areL+l+prqv+vWFqnrRARtk+kq+E ++e Lk+ ++al++en+rL+ e ++L++ EPS73415.1 103 RKKLRLSKAQSALLEESFARYSTLNPMQKQGIARELKLTPRQVEVWFQNRRARTKLKQTELNCELLKKFCNALADENRRLQMELKALKS 191 69************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 83 | 157 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-18 | 92 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 99 | 159 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-14 | 101 | 163 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-15 | 102 | 157 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.35E-16 | 102 | 160 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 134 | 157 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.1E-13 | 159 | 199 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDGSDDFCSL GLGFHHTYDV KRKKTPPLEP SLTLSISAEN CDVFRNPAAF DEAKSSADLH 60 RQDSVAASPS TGAKKDMEIG VSDETETETE KVSSDDGSNS NRRKKLRLSK AQSALLEESF 120 ARYSTLNPMQ KQGIARELKL TPRQVEVWFQ NRRARTKLKQ TELNCELLKK FCNALADENR 180 RLQMELKALK SAPPPAAAIC SSCETIAAAV NNPFAITLPT GGTRSILPVP PNHRPAAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 159 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363789.1 | 3e-61 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 7e-43 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | S8D224 | 1e-175 | S8D224_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055199 | 1e-60 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-43 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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