PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | WOX | ||||||||
Protein Properties | Length: 160aa MW: 18610.1 Da PI: 11.115 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70.5 | 2e-22 | 59 | 117 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e+ EPS72786.1 59 SRWNPTPEQLQTLEELYRRgTRTPSADQIQQITAELrrfgKIEGKNVFYWFQNHKARER 117 7*****************99*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 115.8 | 2.1e-37 | 58 | 119 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ++ Leely++G+rtP++++iq+itaeL+++Gkie+kNVfyWFQN+kaRer k EPS72786.1 58 SSRWNPTPEQLQTLEELYRRGTRTPSADQIQQITAELRRFGKIEGKNVFYWFQNHKARERLK 119 79**********************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.2E-5 | 56 | 123 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-9 | 59 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-12 | 59 | 125 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-20 | 59 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.77E-6 | 60 | 117 | No hit | No description |
PROSITE profile | PS50071 | 10.916 | 64 | 119 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTMGFDGGKD SLAGRRLRPL MPRPSNHGCD FLPRLGAAIV EQNGKARELV NSQQVVVSSR 60 WNPTPEQLQT LEELYRRGTR TPSADQIQQI TAELRRFGKI EGKNVFYWFQ NHKARERLKR 120 RRQMDQHSPE KGEQQQITGQ IPEIRNRNPK SAHDLFRIHD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451629.1 | 8e-50 | WUSCHEL-related homeobox 1 | ||||
Refseq | XP_006490833.2 | 8e-50 | WUSCHEL-related homeobox 1 | ||||
Swissprot | Q6X7K0 | 7e-45 | WOX1_ARATH; WUSCHEL-related homeobox 1 | ||||
TrEMBL | S8D5T8 | 1e-115 | S8D5T8_9LAMI; Uncharacterized protein | ||||
STRING | XP_006490833.1 | 1e-50 | (Citrus sinensis) | ||||
STRING | XP_006451629.1 | 3e-49 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 3e-47 | WUSCHEL related homeobox 1 |
Publications ? help Back to Top | |||
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