PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | DBB | ||||||||
Protein Properties | Length: 115aa MW: 12977.9 Da PI: 8.0569 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.5e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + ++e+++fC+ ++ lC+ C H H+ EPS72497.1 4 QCDVCCKQEASIFCTADEATLCHACDHRVHTAnklaskHS 43 7******99*****************99995456666665 PP | |||||||
2 | zf-B_box | 35 | 2.9e-11 | 54 | 96 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 e + C+ ++ k++ +fC++++ llC+dC + +H+ Ht EPS72497.1 54 ESPFCDICQGKRALFFCQEDRALLCKDCDFPIHQAnqytkkHT 96 6789*****************************7667777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.438 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00115 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.9E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.011 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-17 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.5E-9 | 54 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.73E-7 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MKIQCDVCCK QEASIFCTAD EATLCHACDH RVHTANKLAS KHSRFPLLNP QLKESPFCDI 60 CQGKRALFFC QEDRALLCKD CDFPIHQANQ YTKKHTRFLL TGARISPASS SQSET |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088466.1 | 9e-56 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 2e-48 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | S8EIT6 | 6e-79 | S8EIT6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B00192.1.p | 2e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-51 | salt tolerance homolog2 |