PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72138.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 280aa    MW: 31215.9 Da    PI: 6.3706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72138.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35181082101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y +++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++++kell++i+
    EPS72138.1  18 FLSKTYLMVDDSAVDDLISWNEEGTAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFRRDEKELLNEIH 105
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    EPS72138.1 106 RRK 108
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3710101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5614107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3416107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-201841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-205668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSGDAGAGES QRSITTPFLS KTYLMVDDSA VDDLISWNEE GTAFIVWRPA EFARDLLPKY  60
FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DFFRRDEKEL LNEIHRRKLP PALSIPVASL  120
PNRSSASNSA EEQAISSNSS PTITHPPALK LCPSSFDILM ENDRLKKENS RLSEELHHLR  180
GLCGSIYSLM SNYATNSAAA TSRSGDVADA QPSTSLNEEE QSYPRIFGVP IGAKRARRCE  240
PGEMEDPSPA TPRGGEIKPD PLSASRTDKY NPCLMLINNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22510716129Heat shock factor protein 1
5d5v_B1e-22510716129Heat shock factor protein 1
5d5v_D1e-22510716129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737011.11e-89PREDICTED: heat stress transcription factor B-2b-like isoform X1
RefseqXP_024994799.16e-90heat stress transcription factor B-2b
RefseqXP_024994800.16e-90heat stress transcription factor B-2b
SwissprotQ9SCW42e-72HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLS8E8F50.0S8E8F5_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000078956e-89(Solanum tuberosum)
STRINGPGSC0003DMT4000315536e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-70heat shock transcription factor B2A
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]