PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72081.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 283aa MW: 31724 Da PI: 8.034

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72081.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	222	244	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+++Fs+ +L+ H + H EPS72081.1 222 VCPQCKMRFSNVGDLVDHVERvH 244 6*****************99888 PP
2	zf-C2H2	16.2	2.9e-05	256	278	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H EPS72081.1 256 ICPKCSKGFRDPVALVEHVEKqH 278 5*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	2.49E-11	7	49	No hit	No description
Gene3D	G3DSA:4.10.1110.10	7.8E-10	10	53	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.711	10	56	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	9.3E-13	13	51	IPR000058	Zinc finger, AN1-type
SMART	SM00154	3.1E-4	13	52	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	4.12E-10	54	146	No hit	No description
Gene3D	G3DSA:4.10.1110.10	1.2E-9	87	148	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	8.149	99	146	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	6.9E-9	102	141	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0059	102	143	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.033	221	244	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	223	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.7	255	278	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	257	278	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGTPAFPNLG KHCSVQECRQ IDFLPFTCDC CQQVFCLEHR SYIKHKCPKS DSTDVTVVVC 60 PLCAKGVHLV HDQDPNITWE SHVNVECDPT NYDTTVKKKK KCPVPRCKEV LTFSNTVKCR 120 DCNIDHCLKH RFGPDHDCPG PTKKDESPFQ FMSFLNRTTG KAENTATAAP ERSWASTFYR 180 MASSVRSSAE AGMARLSGEL NRSQESTSGG QSVTRRDDRV EVCPQCKMRF SNVGDLVDHV 240 ERVHERNGVM KSTLDICPKC SKGFRDPVAL VEHVEKQHGG VSR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075237.1	1e-141	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q8VZ42	1e-111	SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBL	S8D3T6	0.0	S8D3T6_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.J01765.1.p	1e-133	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5311	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-103	C2H2 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]