PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72059.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HB-PHD
Protein Properties Length: 398aa    MW: 44924.5 Da    PI: 6.1357
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72059.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-10344388953
                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ ++ L  +F ++  p++++r +L+k+lgL+  +V  WF+N R+
  EPS72059.1 344 SDAIRKLRVVFSETELPTRAARVKLSKQLGLEFGKVNKWFKNARY 388
                 678999*************************************97 PP
2PHD377.5e-13105159150
                 SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
         PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                 +C+ C+ +d+  +++++lCd +C+ +fH+kCl+++l+s+++p +   w+C+ C++
  EPS72059.1 105 FCAKCKLQDAlpDNDIILCDgTCSCAFHQKCLDPPLSSDDIPPEdeGWFCKFCEK 159
                 699999955556********56*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.44E-1495163IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.7E-12102161IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.505103160IPR019787Zinc finger, PHD-finger
SMARTSM002495.4E-9105158IPR001965Zinc finger, PHD-type
CDDcd155041.58E-29105157No hitNo description
PfamPF006282.2E-10105159IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590106157IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.5E-10327387IPR009057Homeodomain-like
SuperFamilySSF466894.71E-9331390IPR009057Homeodomain-like
PROSITE profilePS5007111.677333393IPR001356Homeobox domain
SMARTSM003892.4E-7336397IPR001356Homeobox domain
CDDcd000861.57E-7336388No hitNo description
PfamPF000462.4E-7344388IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
KRKKNGKNSV ALDEASRLQR RARYLLIKLK LEQNLIDAYS AQGWKGQSRE KIKPEKELRR  60
ATEEILKCKL GIREAVRQLD FLGSEGCTSN PAVEPDGSVH HDYIFCAKCK LQDALPDNDI  120
ILCDGTCSCA FHQKCLDPPL SSDDIPPEDE GWFCKFCEKK MEIIEATNAH LGTQFPLDSN  180
WEDVFREEAA LPDMESSMLF PEEGEWPSDD SEDDDYNPNR IDASSGCSSS SLMGSAGDES  240
GRRSSRPREA EDSDDIEVIT GPRKRAAVDY LQLHNELFGK GGTDENDQMS EDEDWGPKKK  300
KKKKRKEEKE TDAATTLIAL GGFETTDAKR ENNDVRKRAA KLPSDAIRKL RVVFSETELP  360
TRAARVKLSK QLGLEFGKVN KWFKNARYLA LKARKVKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296305PKKKKKKKRK
2297305KKKKKKKRK
3299305KKKKKRK
4300305KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553235.11e-168pathogenesis-related homeodomain protein isoform X1
RefseqXP_020553237.11e-168pathogenesis-related homeodomain protein isoform X1
RefseqXP_020553238.11e-168pathogenesis-related homeodomain protein isoform X1
RefseqXP_020553239.11e-167pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-131PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLS8CXB00.0S8CXB0_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_11s0103g00650.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-114pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]