PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71585.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 300aa MW: 33213.6 Da PI: 5.3453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71585.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	34	80	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++ + L P p++K +Ka+ L ++++YI+ Lq EPS71585.1 34 RSKHSETEQRRRSKINERQASLS---PF----PAPKRDKASFLLEVIQYIQFLQ 80 899************988875...33....689****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-12	33	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	33	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.38E-9	34	84	No hit	No description
Pfam	PF00010	6.8E-6	34	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVRATSLLED EEAHYSSSPT DCRRADPKVN NVTRSKHSET EQRRRSKINE RQASLSPFPA 60 PKRDKASFLL EVIQYIQFLQ EKLHVYEGSC QGWSPEPSKL LPWKINSGAP VESFADQSHL 120 DRNSMGPEDN AILNPSLLND AHDSVDADLT GATLYNVPDG QQIPTNTLPL NMHLFGDLSS 180 QHHEGGLVGS EHVTHQSQSH DLLMRAREQD CSAPDYPING EELITDSGEA ASISNNCSQR 240 LLSSLVKALQ SSGVDLSQSS ISVQLDIGKQ GHGNVCDVDY ASPTNEEFRH PRKKYRSDQT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00534	DAP	Transfer from AT5G38860	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085580.1	1e-105	transcription factor BIM2 isoform X2
TrEMBL	S8CXB7	0.0	S8CXB7_9LAMI; Uncharacterized protein
STRING	Migut.H00581.1.p	1e-70	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8947	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-40	BES1-interacting Myc-like protein 3

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]