PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70820.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SRS

Protein Properties

Length: 276aa MW: 30788.2 Da PI: 6.4969

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70820.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214	3.7e-66	71	216	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 ++++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaa+rrerqqq+++++ a +e+++ r+ ++ ++ ++a + +s + + +e+ EPS70820.1 71 QGMNCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAARRRERQQQQQQQQLAVAD-VEEEEEMRESSTAKRLREAGD----ASRLPVSGFEV 164 578*********************************************9998876554433.333333333333333344444....4445566899 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++P+ev+ +a+frcvrvssvddg+++laY+tav igGh+fkGiLydqG+e+ EPS70820.1 165 ENFPAEVNCPAIFRCVRVSSVDDGDDQLAYHTAVAIGGHLFKGILYDQGPEN 216 **************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-63	72	215	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-27	74	116	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.3E-25	167	214	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSDFFSLDCN SGGGGSGSYF FKNEEIYNKG FELWQQYYHL HQQRLLQLQL HHDAGSNFDG 60 YDCSPSKRGG QGMNCQDCGN QAKKDCLHLR CRTCCKSRGF QCQTHVKSTW VPAARRRERQ 120 QQQQQQQLAV ADVEEEEEMR ESSTAKRLRE AGDASRLPVS GFEVENFPAE VNCPAIFRCV 180 RVSSVDDGDD QLAYHTAVAI GGHLFKGILY DQGPENRPAI DRRRIEGASA GGVIPAVHQQ 240 AHDVISAADI DPSIYPTPLN AFISGNQYFP PPRPSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022875871.1	3e-89	protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	2e-63	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	S8CVH8	0.0	S8CVH8_9LAMI; Uncharacterized protein
STRING	XP_009599252.1	2e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	6e-56	SHI-related sequence 5

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]