PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS70474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | WOX | ||||||||
Protein Properties | Length: 221aa MW: 24781.3 Da PI: 8.8277 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.3e-20 | 21 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t+eq+++L++l+++ r psa++++++++kl +++ ++V++WFqN++a+e++ EPS70474.1 21 TRWTPTAEQIRILKDLYYNngVRSPSADQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 81 8*****************8678*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.4 | 2.7e-37 | 19 | 83 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt+eQi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ EPS70474.1 19 TTTRWTPTAEQIRILKDLYYnNGVRSPSADQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 83 689***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-11 | 11 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.787 | 16 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-6 | 18 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-8 | 21 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.02E-7 | 21 | 83 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 21 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MATTNGDDRA AASLASRQTT TRWTPTAEQI RILKDLYYNN GVRSPSADQI QRISAKLRQY 60 GKIEGKNVFY WFQNHKARER QKKRFTAAGE NLHHHRQGLQ ISDHLLAYAA KAAPPHRRHG 120 SADFRDCSAT PPPTFAWDAF PPPCGRSFHD QNRDEEEDAP EIETLSLFPM HSAGDDHHRL 180 PWQRRLFSSS SSSDCSGAGG SLELTLNSYG NSPLHFHSGA S |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100154.1 | 2e-47 | protein WUSCHEL | ||||
TrEMBL | S8CT84 | 1e-164 | S8CT84_9LAMI; Uncharacterized protein | ||||
STRING | Aquca_004_00664.1 | 1e-47 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7604 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-39 | WOX family protein |
Publications ? help Back to Top | |||
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