PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70298.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 238aa    MW: 27557 Da    PI: 8.4169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70298.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.66e-5461311128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+v+yL++++++ ++++ ++i+evdiyk++PwdLp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s + + 
  EPS70298.1   6 LPPGFRFHPTDEELIVHYLRNQATSMPCPA-SIIPEVDIYKFDPWDLPEKTEFGENEWYFFTPRDRKYPNGIRPNRAAVSGYWKATGTDKAIYS-GAKY 102
                 79****************************.89***************99999*****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfykgr pkg+k++W+mheyrl
  EPS70298.1 103 VGIKKALVFYKGRPPKGVKSNWIMHEYRL 131
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-664158IPR003441NAC domain
PROSITE profilePS5100561.0976158IPR003441NAC domain
PfamPF023656.8E-277131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVGTNLPPGF RFHPTDEELI VHYLRNQATS MPCPASIIPE VDIYKFDPWD LPEKTEFGEN  60
EWYFFTPRDR KYPNGIRPNR AAVSGYWKAT GTDKAIYSGA KYVGIKKALV FYKGRPPKGV  120
KSNWIMHEYR LNESRNLPYK QNRSMRLDDW VLCRIYKKKD TAAKPSDREE HPTVQIVPRD  180
ERDDETTPLE LQPPSSSSYT HNFPRTCSLT HLWELDYIGS ISALLGDNSH ETSTGQRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-73116412171NO APICAL MERISTEM PROTEIN
1ut4_B9e-73116412171NO APICAL MERISTEM PROTEIN
1ut7_A9e-73116412171NO APICAL MERISTEM PROTEIN
1ut7_B9e-73116412171NO APICAL MERISTEM PROTEIN
4dul_A9e-73116412171NAC domain-containing protein 19
4dul_B9e-73116412171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075519.11e-122LOW QUALITY PROTEIN: NAC transcription factor 29
SwissprotK4BNG71e-116NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLS8E3J41e-178S8E3J4_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc04g005610.2.11e-115(Solanum lycopersicum)
STRINGXP_009606198.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-108NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]