PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68946.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family YABBY
Protein Properties Length: 122aa    MW: 13519.3 Da    PI: 10.4558
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68946.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY28.93.6e-092313261
       YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaes 61
                + +vtvrCGhC++llsvn+    q+++ ++
  EPS68946.1  2 LAIVTVRCGHCSNLLSVNMGGGYQQVSEQQ 31
                689****************98887776655 PP
2YABBY132.45.8e-413010595170
       YABBY  95 svssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +++s ++ s+n+  ++  +pp irPPekrqrvPsaynrfi+eeiqrikasnP+ishreafs+aaknWahfP+ihfgl
  EPS68946.1  30 QQAS-MIqSSNRMIQSEPPPPPIRPPEKRQRVPSAYNRFIREEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 105
                 2222.22244444444445668*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.6E-3830105IPR006780YABBY protein
SuperFamilySSF470953.01E-84898IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-55399IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MLAIVTVRCG HCSNLLSVNM GGGYQQVSEQ QASMIQSSNR MIQSEPPPPP IRPPEKRQRV  60
PSAYNRFIRE EIQRIKASNP EISHREAFST AAKNWAHFPH IHFGLENSGS KQRKAAAAGE  120
AA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851072.14e-52PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB07e-48YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLS8CVI31e-84S8CVI3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D02379.1.p1e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-43YABBY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]