PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS68470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 157aa MW: 18799.5 Da PI: 11.3279 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.7e-35 | 5 | 97 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk++e+++d++++++isws + +sfvv+d++ f++++Lpk+Fkh+nf+SFvRQLn+Y F+k++ + weF+++ F++gk+ell++ik EPS68470.1 5 FLKKTFEMVDDPSTDSIISWSPTRTSFVVWDTHAFSSHLLPKHFKHNNFSSFVRQLNTYRFRKIDPGR---------WEFANEGFRQGKRELLRYIK 92 9********************999****************************************9988.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ EPS68470.1 93 RRKQS 97 **987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.5E-57 | 1 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.8E-34 | 2 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-37 | 2 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.3E-19 | 5 | 28 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.4E-31 | 5 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 43 | 55 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 44 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-19 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
GPAPFLKKTF EMVDDPSTDS IISWSPTRTS FVVWDTHAFS SHLLPKHFKH NNFSSFVRQL 60 NTYRFRKIDP GRWEFANEGF RQGKRELLRY IKRRKQSSRY RAPKSDSERK GLETQVWKLK 120 QQQQRLVRYV ARFGEHLRAV ELKQRRMLLL LLSSSED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-22 | 5 | 97 | 20 | 123 | Heat shock factor protein 1 |
5d5u_B | 1e-22 | 5 | 94 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 5 | 94 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 5 | 94 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580278.1 | 6e-58 | PREDICTED: heat stress transcription factor A-2-like | ||||
Swissprot | Q9SV12 | 6e-51 | HFA7A_ARATH; Heat stress transcription factor A-7a | ||||
TrEMBL | S8CP31 | 1e-111 | S8CP31_9LAMI; Heat shock factor (Fragment) | ||||
STRING | Solyc07g040680.2.1 | 3e-57 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5681 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51910.1 | 1e-52 | heat shock transcription factor A7A |
Publications ? help Back to Top | |||
---|---|---|---|
|